Scaffold Ga0209359_10172511

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209359_10172511

Scaffold Ga0209359_10172511

Overview

Basic Information
Taxon OID	3300027830 Open in IMG/M
Scaffold ID	Ga0209359_10172511 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	958
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-38.0018	Long. (^o)	-44.9985	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209359_101725111	F042384	AGGAG	MGLMPVYYTTTKLSGRRKSSVRTQRLNADHEKWLRSMGVDKTFRLKPEPLKKSAKKTERYRSVGNGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR
Ga0209359_101725112	F049043	GAGG	MKRNNIEEMHKQMFILVNLLKKDGHDPLAIAGCMLAGAVQIYQAELGIETTQDLLDQIANGDDDFDIDLDVDKETIH
Ga0209359_101725113	F056677	AGGAG	MDIYRNQERELKLAKKPLIVLEDELWQINQLNRLRKDLRNRKKRLEKVIAVKRVALQAVQEKIEREVANEKK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.