NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209491_10001911

Scaffold Ga0209491_10001911


Overview

Basic Information
Taxon OID3300027832 Open in IMG/M
Scaffold IDGa0209491_10001911 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38901
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (32.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003622Metagenome / Metatranscriptome476Y
F005194Metagenome / Metatranscriptome409N
F009788Metagenome / Metatranscriptome313Y
F087884Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209491_100019113F003622N/AMRTYNKELEYIASDILDQNANGAEKPNYSNRDFMNTLLIFQTALMDKMYNNQDYDKMGKEDRMNMATKCGLDLRKLIHTYTGLDTHKIEDFI
Ga0209491_1000191139F087884GGAMLYDLTVGQYQLLNEIDEELSMIEQNIYAVSAIKGITYEEASRIKMTEFSKLIEGISEFNIKLLEKLRINNSIVLNGVKYHVEHKPDKLSSGQLLDVLNIRSKNQGKAVEVMDLLLAAMARPKGKEYGDDGLNINERAALIRDAKLSEVWNVFVFFWNLWNNYFNDSEDSLTKWMEETPKKVQEILDNDGDYSA
Ga0209491_1000191148F009788N/AMTITSAEYTVNVTLAAPLSVNGRYVSFTLIEGVQDLTNATIALPNNGDYPYEIINATTLSGTTGVVIQRGILRLKQAAEVVYSYTDEQTTFIYE
Ga0209491_1000191151F005194N/AMEGIATEHPQINTVLKGNIFDIDLTKSPTGGYLIYDVVSISPNGFNGIDYSLDMFLCDNVTELNTESNEVSVQNECALISLDIMSIFENYNKTSWADKDLHLVLNKNWSIQPFTERFDSLYSGAAINMSLSTSYGYARCKVPVKI
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