Scaffold Ga0209491_10008737

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209491_10008737

Scaffold Ga0209491_10008737

Overview

Basic Information
Taxon OID	3300027832 Open in IMG/M
Scaffold ID	Ga0209491_10008737 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12696
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (96.55%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022997	Metagenome	212	N
F040489	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209491_100087371	F022997	AGGAG	MAKLIDFPIGLDAGETRLDLDPDKVLTGAVGMLKEVVIVGYEADGSFYFSSTRANGPDVLWLLKQAEQ
Ga0209491_100087375	F040489	GAGG	MTQEELLADDTQYCCYCGQEKARFQCCGENHFQTLAEMSAEERQEFLDDEE

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