NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209491_10018658

Scaffold Ga0209491_10018658


Overview

Basic Information
Taxon OID3300027832 Open in IMG/M
Scaffold IDGa0209491_10018658 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7505
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007738Metagenome345Y
F021053Metagenome220Y
F033324Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209491_100186583F033324N/AMNDAAKRMMDAANTEALFAAAHAAIPLEARKAELLAKMRRLHYNASIGQGFTPEEAIDLCLATVNY
Ga0209491_100186586F007738GAGGMSGAAIASEVALAYAEAGRDAGDGLGAVYVTITRPGQPTGPEWNPTPGAPVIHTFTTKPSSGQAYTQRTGLALGAGELVYSLVNHGVTITPSTSDVLTIDGANWPVQEVIPMDPAGYVISWMVKVNK
Ga0209491_100186588F021053N/AMSKHTSTYPGVLILPDGTEVKLGGSVPISADLAKNAGVAGWIGSAWLVPVKAEAMPTGKK
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