Basic Information | |
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Taxon OID | 3300027832 Open in IMG/M |
Scaffold ID | Ga0209491_10184250 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1820 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Bonney | |||||||
Coordinates | Lat. (o) | -77.714 | Long. (o) | 162.445 | Alt. (m) | Depth (m) | 83 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020325 | Metagenome / Metatranscriptome | 224 | Y |
F037979 | Metagenome | 167 | Y |
F065935 | Metagenome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209491_101842501 | F020325 | N/A | IADFLFEKQMDSAYKDGIRIGAEYATRKLSFEVGIKRQLSLTKTEERGYNHAIVAVERIKPEIASKTGASV |
Ga0209491_101842504 | F065935 | GAGG | MIDMADMSGKILWTKGREAGIEAERERIIKVFQAKEARRTIIEALEYPYTAQELEDTIREGQE |
Ga0209491_101842506 | F037979 | GAGG | MSYLFLGLDGEMSSSELSEGGKLIQIGISTLDGNNRSYTMNPGECQWSEQAEAVHGLSLESLQLFRSPAEVDQDLYEFLITLGADTKRRGKTIPVGFNVGAFDMPFVKDSLPKTYSLFSRRTVDLNAICFALDHKEENGMPVKAETWKKKAKAYAIEKIGMENQHDAGWDSLMHIYCFEFLRGIINSNGGTR |
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