NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209515_10005018

Scaffold Ga0209515_10005018


Overview

Basic Information
Taxon OID3300027835 Open in IMG/M
Scaffold IDGa0209515_10005018 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17461
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006542Metagenome / Metatranscriptome370Y
F022846Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0209515_1000501816F022846GAGGMPLAAPEELGRELSELAFGIIEQDWLKEHIGKAVDVKSLDLMQTNAAEWELTYLILFAITSGCGTFSATDRDRATAALKAFHAAFLKQIAAQAGQDIADAHEKNLVPRYRLYGQTIEGEDTTHPYKTQYKRLGEAAAIQILGKPIEDPQTADIFRETIKVIFTEVREAAIKVIRHQQVVPAQEDA
Ga0209515_100050186F006542AGGMDETELSELLTAPGFFRFLAQQAKLDSEEIKRIYMLGRPWGLWPPDLDISHEAAEVGVDVFTYLAALQPLLDMDTKEKEAQLNTYEATLTGGETTQLIPAVRAQVEKVAALSREDEATICRILHALYAYRQRVGRLSIQKVGESSRHKMEQGKAAAIAKLQRTLATELEQRKNLP
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Institute for Fundamental Biomedical Research
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