NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209515_10050596

Scaffold Ga0209515_10050596


Overview

Basic Information
Taxon OID3300027835 Open in IMG/M
Scaffold IDGa0209515_10050596 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F015246Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0209515_100505965F000092GAGVKQHLGRQSGVQTVEVSLLDGKVEVTPKEDGQIDPAQLLKATHDSGVTAAEMDMTARGKIVKDSSGRLALQVEPNRSFPLAPNELSKGLESLADTRTVVTVRGQLYKKPVGKKKADSSAPLTLLIMEVQKRE
Ga0209515_100505966F004291AGGAGGMSTKKLALLALLIAMVAPVAQAQIKHIEMRVEGMT
Ga0209515_100505967F015246N/ALTWLHSQNERIAGVTQNRSGGEVLLAGITTYVGVRPGMHVWLGMDWNVAHSTGATFIPVRRHISFGITQQFRLHL
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