NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209230_10000977

Scaffold Ga0209230_10000977


Overview

Basic Information
Taxon OID3300027836 Open in IMG/M
Scaffold IDGa0209230_10000977 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11370
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (97.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F004924Metagenome / Metatranscriptome418Y
F010760Metagenome / Metatranscriptome299Y
F032651Metagenome / Metatranscriptome179Y
F036696Metagenome169Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209230_1000097710F010760AGGAGMELQNIVKVYNGKMGCMCGCNGKYSYTEDGAKNFGPGYDVTDSISERSVKIIAKKVLSNPLANRDESTEYVFVEDRARNKIQVVYFKTLDK
Ga0209230_1000097716F000652AGGTGGMKVLVTTTITQELEVPEGWDRFDVFDFLAENQSFRTAFQGVSNEDQTARIIDLHVVDEQVDAMGEVAYDD
Ga0209230_1000097723F032651AGGAGMQKVKVISVEDAGYYSSEYASGSTVKVTLQRGKEIASCTQILIWDEEYKEDCFEDWMDCALAGETGYTYTEGA
Ga0209230_1000097724F004924AGGAGMRDAILAKLAEIDDMLMEATLDGEQLAEMDCFAELEGALHKLTEAVDYYVD
Ga0209230_1000097725F036696AGGAGMSKALNKRIADAFNTIYERGDAGLDYMDAHVELDADLMQFFYDDAVETLSKADKTRLADMLELVVADMEFDLETF
Ga0209230_1000097727F099274AGGAGMALVEGKQVQVGDVVCFKSDVEQSGTIYKIVGDRLYLESKYGFHGDYIGGQEETIQSARDCWIEG
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