NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10001233

Scaffold Ga0209089_10001233


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10001233 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23404
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000942Metagenome / Metatranscriptome826Y
F011406Metagenome / Metatranscriptome291Y
F029555Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100012331F000942AGGMSNPYELRFRLLEMATGYLQDKQERQLNYAIDAWEFAKERGTADMKAFTDLQPDPYTIEDIKKKAAELYEFVEKQ
Ga0209089_1000123318F011406GGAGMPLVKATLMMELAGYFAAYAPDPMKPGKDIAKAFKNYLMMGMNAGGFPASNVVDAAAGVGIGGVFAQQLPVGAAIGSQIATQLSTMALTFLSGQQIGPPVVAPTHMPQLIQLFSGPQPAPMAFAKELAGILDTWTKTWVVSGLIPGAPPVPFTGPLS
Ga0209089_100012332F029555AGGAMSDFKGGYKTEVARYELIPEERILFEKHIETHDLVDLAGRIEKGEPHEINPAYGGKGYTYLYPAAEYLGRVKVALIDNKWNLNWEDNRGRIY
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