NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10006239

Scaffold Ga0209089_10006239


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10006239 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9690
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F016675Metagenome / Metatranscriptome245Y
F021858Metagenome / Metatranscriptome217Y
F039176Metagenome164Y
F072760Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000623912F039176GAGMTIDLSLNRSLEELVSSYFEAHGAGIDLDEDTRPEEIDDYYVLENYLSDMGAI
Ga0209089_1000623913F072760GAGMSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF
Ga0209089_1000623915F000615GAGGMCRLRSFYECSDGTLQCTEMVVSYEEDIAGLIRHLGTGGRMVITEYFEV
Ga0209089_1000623916F007052GAGMEKNETYFVARLINKGKFLSSEIFESLEEARLWAMAEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERV
Ga0209089_1000623919F016675AGGAGMKNFEVDYETTLPPWHIGHEKYEAEDLDTMKRKFHSRHEAARLMKVTEVLEDQYKSLFVS
Ga0209089_100062395F021858N/AMIDVNRFENRIVNFKRISAGVETIREAEVRQIDYDQLADIPRSVTARFVKPLNAVMILDYDKTLEKFRGPLGPDMLESDFDIKEFISSSKMGVTDRTIRSPKRNRPKF
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