NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10011058

Scaffold Ga0209089_10011058


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10011058 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6858
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F002874Metagenome / Metatranscriptome524Y
F025857Metagenome / Metatranscriptome200Y
F030563Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1001105812F001048N/AMSLHNMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVRKRVRWELGSEGMAVWDACGYKDIPTLAKAYRIS
Ga0209089_100110583F030563AGGMPWPSTRVCSGCLNVFNRAECNIDISDFWNMPEELAWACSTKCAEDAKDNWLKPKNKMKNNVELS
Ga0209089_100110585F002874GAGMKEKIDLSLNRSLGELESSYWEFLEATEGEDSSEWNKSVQEDLSALEGYLMKMDLL
Ga0209089_100110586F025857N/AMTLHRIAHGCTFESEDDVVMNPVIGRKKSVAVKSPKLYYRTSELDDIPDNFVERMKKFKRVEVRKEEREVITPDGFAVSIAYNKSGYQLIPKEDL
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