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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027838 Open in IMG/M |
| Scaffold ID | Ga0209089_10014524 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5778 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 177 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041251 | Metagenome / Metatranscriptome | 160 | Y |
| F049037 | Metagenome / Metatranscriptome | 147 | N |
| F060975 | Metagenome / Metatranscriptome | 132 | N |
| F071313 | Metagenome | 122 | N |
| F097503 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209089_100145241 | F049037 | N/A | ESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDLPSMAITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFIFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKAREGTTRQYDHLGAVVRRQMGRNVAALRGDEDQGEEQQGKWVKLSETIW |
| Ga0209089_100145242 | F060975 | AGGAG | MGKTIRNNMVAKHSEKYNKPKTVRDKKKDFYRPDAKREFEEAIEDMGFDEHNRKDAIITQYQDDLARNQEDGWPYED |
| Ga0209089_100145243 | F097503 | GAGG | MDCDTFDCVIETFEHRMMEGCIANEFKCTYTEETGEFIAEINGKFYVAMIREKK |
| Ga0209089_100145247 | F041251 | N/A | MKEYNIDDVTEIAKAIKSGDRVENEIGTVIDGFFWFPDEMQWAAQWQKEEKQKSPHTYFAMLLDPDVFVDEEDEEEIMAGVEYWWHRSQIYAAAFLVNNKPVIASHYTEELAQKSLKDIMTMQEEVKQVFKDKGMDLSAGKPHDIWMVVRTTAQNIHNNVRGVH |
| Ga0209089_100145248 | F071313 | AGG | LKQSENFCILPNSLLPAMSELSKGEIRALIGVLSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKINRRFNNSNTYEFVWTGCTPPVQGALEPPVHVPLPNRPSNRPLSIGEFLKQYPKPSPPSGWQSYIWANATKEWKDKGLEEIKDQIFLDIRDRLHREWRDVEYWPNPATYLKQQWWTQPMEGRTTTDRETSDTRYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |