NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10021240

Scaffold Ga0209089_10021240


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10021240 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4556
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012920Metagenome276Y
F062183Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1002124012F062183N/AMRWSNDEEFEYIVPSGKPLTVAWNMDGDDVEISAIYWEDKKEQSHYTGDELWEMDSNLAEDIMSYIEDIFLHSEDFWLTKSGYDF
Ga0209089_1002124015F012920AGGMLYIHSMKKKLINEVREIKRKMSLPLVRKGPRGELVPPKFTERENELLLEMLTRRSKRHPTPGGHISAPMKMHKNRLNRGEGHNEKGEF

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