NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10088222

Scaffold Ga0209089_10088222


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10088222 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041251Metagenome / Metatranscriptome160Y
F071313Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100882223F041251N/AMGLRQGADDWAGAVKEYNIIDIKEIAEAIKSGEPVENDIGTVMDGFFWFPDEIQWAAQWQKDEEQDSPYDYFAMLLDPDVFVDTEDEDEIMAGIEYWWHRSQIYSAAYLMQQRPAIESRFTENLAQQSLQDLLEMQTEVRSAFKKQGMDVGVDAKPHDVWMIVRTTAQNIHNNVRGIH
Ga0209089_100882224F071313N/ALDDRQDDGSEYTQQRKRDSLKQSENFCILPNSLLPAMSELSKGEIRALIGVLSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKINRRFNSSNTYDFVWTGCTPPVEGVLEPPVHVPLPNRPSNRPLSVGEFLKQYPKPSPPSGWQSYIWANATKEWKDKGLEEIKDQIFLDIRDRLHREWRDVEYWPNPATYLK
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