NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10092669

Scaffold Ga0209089_10092669


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10092669 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1873
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F087733Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100926691F011254N/AMRVDIKTKNPIDKVTITNLDKELLPKLGTIFIGEDWHKLLIPCNRRNIIDITISESEESIKHCLNSGRETEQGYEIWLHGNLAKYFSRISECIAQDDLLYFKNLDNKYLQTVSWNEKVEGDFIPTHVKQFFATGEGPYWYHKDDFANLPYVTYNGPNVDTNINLDEDLQYTDSKFYGEGQCKSLKQQPVLPTITTEQIKNKKLRETMQQLGFTEILQMQYVELQPNSVIPVHRDDFTYEDGRHIINGPTQLYCILSGSSEDIKFKFKNVGLIDTSKPIFINNHKFIHSLVYTGEKPRGVLLAYGISSFTSSQ
Ga0209089_100926692F087733N/AMKWILIIYFFIGGPSGGWFESERTVYETKQECIEYRDFFNTMPKPGTLLARCERADSIS
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