NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10329144

Scaffold Ga0209089_10329144


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10329144 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)863
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008648Metagenome330Y
F017398Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_103291441F017398N/AQGAIQGYIVRRGTVKFKHSSGRMVGGDSEMSEWSAWDEQVVDQIKIEKVHTYNTATRPAEWVKDSVIPRLGKISHKHWKNTAELSTYISQVADAEVRTFGGWARKK
Ga0209089_103291442F008648AGGMKTFKSYLNEGRGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGRGVKNIAKLEGKKKSISAFFEMQSRYMEVGVATSGGVHSVLEMDADVLLSASGDVMSYLDKTGRRWTSISDLKETSRWTKFAAVEKDLEKMFDPLVKKYLKKGEFQENATVWELWRMAKRKVDG
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