NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209403_10017666

Scaffold Ga0209403_10017666


Overview

Basic Information
Taxon OID3300027839 Open in IMG/M
Scaffold IDGa0209403_10017666 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6197
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007771Metagenome / Metatranscriptome345Y
F020372Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0209403_100176661F007771N/AMETIIHAKNIDKKVRLALYGMLHHSAIKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTRITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIEEENG
Ga0209403_1001766612F020372GGAMEEENRVQIYINKKEIKYSHQNIVATINSFLPYLTNDDLDEMMKTFVTLKEHRRQKEHSTMIEVKKHSWPYPNTINKNDTT
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