Scaffold Ga0209403_10385485

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209403_10385485

Scaffold Ga0209403_10385485

Overview

Basic Information
Taxon OID	3300027839 Open in IMG/M
Scaffold ID	Ga0209403_10385485 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	741
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035489	Metagenome	172	Y
F073665	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_103854851	F073665	AGG	MTTLKVIPEEKPDINKVATCSLLDKSALSKKLFTEDECKTIIEMGRAWEQIDAQIQTKSPEEESEKNDDYRNCKMYGPPVDETASWLWVGQKISAAIYDFNAKEGWKFNLIGMAERPMMMEYSEGQGKYDYHIDL
Ga0209403_103854852	F035489	N/A	HANQYHIIWLDESLRHITWGLKPQSENMSTGLCAIQLALETGYDEIDVIGFSGLKDRNYQNIYDGTENYKFDPAAPDKVRVPETYEPLDAAHWESVYLNLVRQYPKIKVNLI

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