NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10000009

Scaffold Ga0209580_10000009


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10000009 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526598
Total Scaffold Genes490 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)376 (76.73%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005643Metagenome / Metatranscriptome394Y
F015364Metagenome / Metatranscriptome255Y
F018971Metagenome / Metatranscriptome232Y
F022039Metagenome / Metatranscriptome216Y
F027959Metagenome / Metatranscriptome193N
F029492Metagenome / Metatranscriptome188Y
F040808Metagenome / Metatranscriptome161Y
F057632Metagenome / Metatranscriptome136N
F077545Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_10000009180F018971GGCGGVTDEMSEPVSKLSSAAPPLAPVGIDDILRDAEALLGLMAKESLDAVAELANTLTVSARDVGAREIEEAARNVQRLASSHGPVVLAGAMRALTDAIVRAERAPAA
Ga0209580_1000000919F005643AGGAGGMRKITLMATAATALTAVMAFAAPANADRICRQVCDEGFCRTRCFDNGDRIYRYDRDRRPGVEFRGPGFGVEIGR
Ga0209580_10000009248F057632GGAMSDHDRLDRMERKLNRIGKYVLFGIALFTVLLAVEMQRMSGDLFFGYGRFALWSFIGVMTVMLLVARAPFRD
Ga0209580_1000000927F022039GGAGGMKNDPADFDQIDEALMTYDLSDEALEAAARVDGGRAMTVGYCATASHAWYCMPL
Ga0209580_10000009280F029492AGGAGMNDKIESTEPRDQDVLACDIADEALEAAAAATKPAFSLVGAPTVSILVACCSG
Ga0209580_10000009361F040808N/AMPGPDLIGPRENAVVGILGLLSVMTGAAVAYFAERFPAHLEALETGAGALLIGGLALASSGLPII
Ga0209580_10000009390F027959GGAMPLALAEYLRHLATRCSRMSRDCNDPVISKELVIISVELVEKAQALEADYAIPRSDDPRAAEIITRDDDDNDK
Ga0209580_1000000987F077545GAGGMKSLHTKLVLSALGVALLSGPAVARQLPDQSKVIVNGQTVGADPDPQIRTQLLREWDSRYGE
Ga0209580_1000000995F015364AGGAGMDHRVKPGGDDVRERRSIANNEASIMPSSRKKRPEQPPYLKRRTFEQGRAEVDAAHVATCRLYCDALDLWRGCAKPLCRRHRHCLGEPTGCFVRGLPRVSARRRLEAQKVVIAGGPRRIAPATHIEWTVRRSALKQIVSWGLG
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