Basic Information | |
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Taxon OID | 3300027842 Open in IMG/M |
Scaffold ID | Ga0209580_10000059 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 108437 |
Total Scaffold Genes | 94 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (75.53%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F004421 | Metagenome / Metatranscriptome | 439 | Y |
F004531 | Metagenome / Metatranscriptome | 434 | Y |
F062927 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209580_1000005962 | F004421 | AGGAGG | MSGKQMIREEEVQFGGDETRGTVLMTVGKLLLWTDLIFLSFVFSGIKGGSYLYTYWTLAQGLVGLTLLTIGRIKRGSLTE |
Ga0209580_1000005972 | F000249 | GGAGG | MKKLWLIVLLTFTALLSLPCLAQSAGGIATEKMFFPSDMLWGYAQFDLAPPHNEIDPNLCAANAGKFGGVNAPCTAFARYRLSGLVEVRPFGRGQLRRFMLFGEPSFLFGKNVPHTLYTWSFDAIGIEHSWGAAVYLGRGFEARVTQHFLFDRLGARDRNLGPADLGPNGPWGRYNAIGIRKYFGTRRW |
Ga0209580_1000005973 | F004531 | GAGG | MSEQENERNMGQEISVSYQAVKSKVYRLIDSLVEDAKSQDDVQESVKRWWKLVHPADRPIARKYLLSVLAKSNASLEAICEGLTDLKDFEMQADSMPRLHTYSDQAAPQRLKASI |
Ga0209580_1000005994 | F062927 | N/A | MSPGDAPAALVMGAGFLAFGLTMILRPGSVRANLDRFADSWKQGSWHPYKMPDWGLRLAGMIAIAGATLFFYIAYLALHR |
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