NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10001750

Scaffold Ga0209580_10001750


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10001750 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9767
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002499Metagenome / Metatranscriptome553N
F017459Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100017507F002499AGGMRTNLVSGFQLSVSYWFDTVLQGMGGPIRDWVYDFLEKKGITRNDIPTRFEDVVKILLERLGTSARVIAYRTMVELYKEFSLSANFDYDDSLSERFVFLRERVLMDRLHPSRTPSLKLGF
Ga0209580_100017508F017459AGGVARRMTQSNKPDPSRKSVSPGLAEARRLLAIVEKSQVPFGESAPIFAKIKTRVDSGQPLNVEDYEHLLRLVKIAKDWNKAEESSAMTEPDETLSG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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