NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10001796

Scaffold Ga0209580_10001796


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10001796 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9572
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003181Metagenome / Metatranscriptome502Y
F009323Metagenome / Metatranscriptome319Y
F011287Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_1000179615F003181N/ALRLDQGPTGELRVVDSGYTDRVQLDTASEEVLRIKALVMNSLSDLNKLYMVDRALYTNTPGIPLYMEFTPQSMRSMKTPLIISEVKLYTVEKFWGLRTLRITR
Ga0209580_100017963F011287AGTAGGMSAVQNVEQATQLALDFVKRYYAFVFPVSARKEALRWIVDFDISFFNPRYARVRILAESGTIEDLKVTLGQLL
Ga0209580_100017965F009323GAGMLDPIVIPTLYFIAVFQLILQAGVFYFAFRVTKLTGSFRAWTLIIASFALLTISNVTSLVLELSLPSDQIANLIQSAGTTTIIISSSINIAASISLFLGMFGLVKRFKGQAKPS
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