NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10003102

Scaffold Ga0209580_10003102


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10003102 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7125
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F028762Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100031023F028762AGCAGGMSENLDRQQRWKQQREDADRQRIGGAYIQGFMETASALVEEEPLFSKGYWTCAKGCKPFGMGLARTPRECPHCHSQLVAWVPGP
Ga0209580_100031027F011833AGGLLLAPQPALLALILLNKVSLYYSAPVITGLAVLWSWFDYSGKAQRRGSSVLRKLERLVEDFGQLNFQKATGPSDERIVRLLDRVVFPVNGPVSSELASAATERIKDIYFTLELWYFSMRQKVRLLLRRTSMMIEYDLLEVVNEFTDFYTEFVEKVAEGTLQLVGRGDMAGLESERESFSTFKTRLSELRGRTNAFLQAVHDDGLPISETKVRALETDPWLNLARASSELQDAAGRQNKIL
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