NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10004983

Scaffold Ga0209580_10004983


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10004983 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5664
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001047Metagenome / Metatranscriptome793Y
F005447Metagenome / Metatranscriptome400Y
F078495Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100049831F078495N/ALFLYQNSAAPLVDQASAYMLLINIGEAFALSNLLRVTWK
Ga0209580_100049838F001047N/AMRETMFDESYNIREVLDDVIERVTLREKLITTAKGFAEKKREERYTLAIKQFEGLMGDFLRLYQPILDRLRSYRDGLQKELQGLKSNLATVTGMLEVSKGIEGLQAKVQRLESDGQELDETIKEKSKITEKIDDLFNRIRTHNPGMGGSSNAYSDVLSGMPKDLFPEPADTGKEVTRKVR
Ga0209580_100049839F005447N/AMALLVALFAIGIPSLTPHVYGAAAPCSPKCAIAILSPGSGGVLNSNQTVSTSFLVSFLVHNYTLVQPGTNNDVNTTTIGAGAHNEGHIHVFVDNVYITIWASVNGIPLTLTPGTHTIRLDLVNDFHQEFSPAVTASTTVNVVDPLQSTANTTQSNASNAMYYSLGALIVSIIAVILVAYVAFKPKPKMA
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