NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10064694

Scaffold Ga0209580_10064694


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10064694 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002492Metagenome / Metatranscriptome554Y
F016467Metagenome / Metatranscriptome247Y
F053513Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100646941F053513N/AAADEVHGIPRSGTVVSRADKADLEAAAAPTERAVPAGQDSVVINSSAVGIGGRWDTFQSRLRERRKEAVAGCSTCTGSASKRGSESTDTLRKAV
Ga0209580_100646943F016467GAGMINKSMEQTSPTPKNLQRAFEHAVRDIYEVGLSGKISQYRTPIAQRLGVKAPSSPANAEKQALADAAKALAQLWKISPHLTR
Ga0209580_100646944F002492GAGGMDIHVSQVPTSAPGWHALYHDALFEKDKQKLPFKIANAEKAILTRMKELFNTSGDHIEEDLILDDALYALRALRTCVQHEMLAA
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