NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10122608

Scaffold Ga0209580_10122608


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10122608 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052754Metagenome142Y
F055137Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_101226081F055137N/ASPDVKRGNAIIINKPISRLQSPVPQLLNEPQLFINPAAVAMGPVGDREKCLPPLGVKLSASVPADPGLAPGLYLGSLGLPSNSAVSGGLAQPPEVDQFGTICSTMIDWVAEASFNPLLSLNQPLGPVTALAFNSQTDSKANLAIADDLGLSIPDQSLQNSAVLFPATQTPGQGHVYIVP
Ga0209580_101226082F052754GAGGMRFVFLFVTCFCGLLLFAKDEQKAMLVSHNDIKGPIIGNNHIEDLEIFADSRVRYSESGNDRKTGSFSTRLTAAELRRLTVLLNSKEMRAVPAEIPSQIRVVDFDWEAKLNIQYASGRQTIAIQNFYPMLNTQRPAYPKALIELECMLRDLQSRATKRPVPTGDEDWCPEVLGKTQ
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