NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209798_10195610

Scaffold Ga0209798_10195610


Overview

Basic Information
Taxon OID3300027843 Open in IMG/M
Scaffold IDGa0209798_10195610 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location NameUSA: Michigan, St. Louis River estuary
CoordinatesLat. (o)46.6972164Long. (o)-92.3279105Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F068035Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209798_101956101F068035N/AEALSCLAYSSGVGIGKTGIATMMESATIEGGLVADRIGMRFARERLTKFVPFVGAISGGVLNYAAVRAIGRTAIRFYESRIDTALAEEIWLEGDREHA
Ga0209798_101956102F002548N/AMPKNQLEPTAELRSGFFERRRLRRIRMIVELTLNLISSDMTVSHREARSLVACARKAILDLYPTFEERYERIIRPHFDRILGSRWPSEEALHNVTTELVN

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