NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10002237

Scaffold Ga0209501_10002237


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10002237 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20536
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (51.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050004Metagenome / Metatranscriptome146Y
F085538Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209501_1000223711F085538N/ALTSEPIFKVGVGINYFDDPQGLIKILINDTVYDYVDKFYVIDGIYAGRNDKQESDHTYLNDLKDIYSKIHIVDMHNKTQIQKRNKYWELAKKDKMDYMIVCDSDEYMDIKPDRFNNSLRIIQDRPEKCYPVMQHMVGITTMSRPRLFKGPYTYRHKQNKKENTISHGSLYDKDDTEIINQMYSWFKDHPKRQINSDNQSGVDGIEMWHDKEFRTKERIIADRVYYDDTPNR
Ga0209501_100022372F050004N/AMVLYIKMDQKTWGQGDFTDSATYDLSGTVYDDNRLATARNISGFTGTLRLIDQDGDSVFTTTENLTLGSDGTILIKFADGKTPTLQGIFKVRLRLEVSGTRLTCIGVNGSDEVYFEHD
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