NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10016187

Scaffold Ga0209501_10016187


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10016187 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6008
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032241Metagenome180N
F041307Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209501_100161871F041307GGAMKDEKTDEPVLFCGVATGYETRVSSLPECWLKMTSAMQTKYRKQKRAEYEALNPKKLDYKVIGTKR
Ga0209501_1001618716F032241N/AERRWLSAVSLGHKTIDAMVRTDLTMLEMLEIQFASNTKRLNVTVTEMSKAVVRYRDEYRKEHGEYNEVDFINSLCSLTGLSATYFKNVEAINRADADMKKSVLAYEVGGYTPSEIEQATKDVDLRRGITDAYLESKRHIGANAPRAIKHDLRVIEAENNHSPDEKRLLGKQVFLDFINQGNRTRDTESHFLLYRQKATKFLREVQHWNLNGLKTKEVSALVGLIENVYNHFKEERRLNGQMFPRKAGENMFGTKETGGDLD
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