NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10104360

Scaffold Ga0209501_10104360


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10104360 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1938
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011527Metagenome290Y
F024421Metagenome206Y
F059351Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209501_101043601F059351N/AIDGLSLDTSLGLLGTINSYDVKYEEKKEEGPKLTYDQIKEKYFVKDINIDTVRKETISAFMTQESDKFHDFAVEAIDSAVLKEDAGIVPDQDLDLYHEILNDEYYSEVLATKELKDKHGI
Ga0209501_101043604F011527N/AMLVYFQFRRCGYYAKGLIEADNLDSASKALWSEHVGTFKWESQLNYIPENANTLTIEEYKYEHSSDRKTEPENEVRSQVG
Ga0209501_101043605F024421AGGAGMSIALIEKLNQKMKLEAKWASELLSNGSVTVEMVNISKEVKTVEREIKEVVEQK
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