NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10146977

Scaffold Ga0209501_10146977


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10146977 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021405Metagenome219N
F081442Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209501_101469773F021405AGGAMTEKILEVDEEILEVDEDKLVYRVGYIKEKLLQMSTALRGQIPPDLADKDLTEDNAFRQWIIVNSIYDASNEDENNDGFNRLLYYLFDKSKGNVARLVNDYDINIKVNDAGQLEDIQLVVLETETAEEADDK
Ga0209501_101469774F081442N/ALHDNKFRMWFVGNTEGNQLYTVTLSNEEKAVVGFIDEGIASNYINRKNIIAMINKSFGPKVVLVNLSLHKIHEVMENNFATSIQITPNAMIHQLIKQPIQTVIVNPNDHDFFVPLNIPYIIKKYADNIGGGELEIESHKDEKELSFYEIDRESKRYVFCPEGPAHDGLQFGEG
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