NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10304074

Scaffold Ga0209501_10304074


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10304074 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)979
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070575Metagenome123N
F077807Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209501_103040742F077807N/AMSKNKKSIYSSLLNNKIDMISSPNGFTNWLHKEMKLQQQQKENIMDKEKKLREHAEVHGKVLNAEQKKLLLDIFNAGREVFDDFDLRYVSAWNLKQLEDLIDDMKDAFGIAPKLSEHKRDDGSDMPSYFQDHVWSDDPRAYKSKD
Ga0209501_103040743F070575N/AMYGLMILEHIKVKISMARHLWDIEFDRVYKEILREYIDDGYDIAEAKTLSKKDTKEIMQEQLDFVEELYDNTLNDLD
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