NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10770503

Scaffold Ga0209501_10770503


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10770503 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012722Metagenome278Y
F069343Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209501_107705031F012722GAGGMKNIMIATSVAVLMSTTAFAKDCKYVQKIILDDNNVILSAKTEYICKESKPIIVLPPNTYTEVKRVRPRVVSHTDYVNGNFYNNEK
Ga0209501_107705032F069343N/AYISIVNKEKEKIMTYIKQHIMEIQEFVWDFFDQDGQFVADETIKDKDDLISTVENNFGSMGVDIAKQEIFEIETGDHFS

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