NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209180_10000924

Scaffold Ga0209180_10000924


Overview

Basic Information
Taxon OID3300027846 Open in IMG/M
Scaffold IDGa0209180_10000924 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14156
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F018143Metagenome / Metatranscriptome236N
F031428Metagenome182N
F065609Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209180_1000092415F018143GGCGGMLSMREKAFAVISFEAQNRGVTVQELLRAVIVPEWARENVQASTTPRTMMQITPDQTKPSMSARQRDSKLAITVGQLRT
Ga0209180_1000092416F065609GGAGGMKNVKPGDRVWVKTPRAIVERKVGTIVAAKKTPNGVRYVVEWEVDLLELPNGHHPGYLANEIVPIS
Ga0209180_100009244F009132GAGLRIRDVSDRFRGSGYSMVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVFFVGSLIVAWWRVGIAVLRIRVNDSQDPITVKLVSTSKAEAVFKALKG
Ga0209180_100009246F031428N/AMRKMLEPFSTGPVAMSAVRFGDSDLAKILRGVLVIVAAGLMILPAYLNYEIWKTGFNPVVSMAISLQLFAIGIVLFILAVGKERRAPKSQPQ
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