Scaffold Ga0209180

Basic Information
Taxon OID	3300027846 Open in IMG/M
Scaffold ID	Ga0209180_10001220 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209180_10001220 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12738
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (65.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12738

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (65.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F028763	Metagenome	190	N
F100464	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000122013	F100464	N/A	VTVSVPAPVGVKVTEQLPANRLQLVAGLNEPPAFPDEVNLICPVGVLAVPLAVSVNVEVHVEPLFVTTDDGAQLTTVEVERPITVSVNDWLAVLVLKVCFVSPL
Ga0209180_1000122015	F013876	GGAG	MSSIDDPLLKELLAALKEDTQRMAADLLSIITTNALIAVFALFLAIASLARIILFEQTPFRMGGPGPVPGLFETALTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR
Ga0209180_1000122016	F001816	N/A	LPLSPDTKKEAEKRLTVLKMIELFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVTATMDGRVTYYGRTEAGKVYQQVLDTELNFLDPYTGGEVWKK
Ga0209180_100012202	F028763	AGGAG	MNEPAPSWRRIALGVFAIIMGCVSLVGLSSTGYYYGLGIFGGAYGAVMIPLGVALIAKKEAVTG
Ga0209180_100012208	F004426	GAG	MRQEIPALATRRRAHPARTVHSMVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEASKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGSTLVPVNITTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNEFEHDSAQWRVFEKAMRGFVKNKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLNPRVAPKINVVPGKTRKEIVLGERKRRRGKRHSREATRSIIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209180_10001220

Overview

Ecosystem & Geography

Associated Families

Sequences