NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209180_10001307

Scaffold Ga0209180_10001307


Overview

Basic Information
Taxon OID3300027846 Open in IMG/M
Scaffold IDGa0209180_10001307 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12310
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014057Metagenome / Metatranscriptome266Y
F016133Metagenome249Y
F025002Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209180_100013073F025002N/AMMVNVWKEAENLSQDCDNALYDQIDSDNTMNTERFDDAMAALTFTAMAVTIALGFLFHL
Ga0209180_100013074F016133N/AMILISEESVVPAMPKFMQTLDDTIFRELEKIAKKRGISIQELIRAVIVPEWVTGHNGSEAREPAATKLNSWR
Ga0209180_100013076F014057N/ALVKDKILCFACAVKNIERTFNTYYELQDHLYRDHDMKKDPAMDIFNKYKPTVAKTPTAEQ
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