NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209180_10001583

Scaffold Ga0209180_10001583


Overview

Basic Information
Taxon OID3300027846 Open in IMG/M
Scaffold IDGa0209180_10001583 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11309
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004152Metagenome450Y
F009674Metagenome / Metatranscriptome314Y
F027476Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0209180_1000158317F004152GGAMTRIVADDLQDEEVFPLVEYMTAMSGGQISQHKKILEVTGLTNKKIKFLLHKFLYTRRLPGYGVLDTAGNFEIVHLKPEEKRKEQPETLSPTMLPGSIGLGGIPRWGKPSDMIEWEGQPPPPKKERYKKR
Ga0209180_100015838F009674GGALSEIVRDLVRQMLRLHFDDATIVFHVKSAKIRNAQKILDSVLAEAKQEAIARLSSRNRYV
Ga0209180_100015839F027476GGAGGMVGWGFAFGRGFVVLLWSIVWAIVAGIVGVLVIGGSLASLVSNPTAVASNPTGLVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYSRGSYSTGSQSMGSQPTLVAPAMRKFCANCGNALPGGMAKCSNCGATL
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