NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209180_10012620

Scaffold Ga0209180_10012620


Overview

Basic Information
Taxon OID3300027846 Open in IMG/M
Scaffold IDGa0209180_10012620 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4390
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045639Metagenome152N
F046938Metagenome150Y
F089795Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209180_100126201F046938N/AKLSQTINNFRDMVRRAGRNPEELKWILRVHNPLEEEKAPEPQALLGGTPQQAAEVLPRVKELGIDHVFYDMNHPAHVPIDTQLVLLRRLVRLIKA
Ga0209180_100126202F089795GAGVLAKPVVPKPTPPRPDGITFLGGIALLAGIMLLFAGISLAIPWYPRWVDGPGLVGFWIILCFGYVGFGQILPTLFLAMIVILAILYLLAGIGFFSGRQWARTLGITLASFGVASSILQTITWAQYDFFAIPGLIVTLLILVYLMTPLARNFFFKRR
Ga0209180_100126206F045639N/AGNAITTVNTVSGIVDSYLTIHDTNVLSPETPVNLATCQTISSPSLFQNLSWLYIVIPLALIVAVAIAYERRHRAKYHGLVEK
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