NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209402_10122657

Scaffold Ga0209402_10122657


Overview

Basic Information
Taxon OID3300027847 Open in IMG/M
Scaffold IDGa0209402_10122657 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)213
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001930Metagenome615Y
F004439Metagenome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0209402_101226572F001930N/AMKSFQQHLKEEVAWQQSASKMIFDFGQTGNMKIPLSSKMMTWIFNVQLPRVTVFHVTNGIGLGNLKKLQNKKKSISAFFNMHASFIDSGIKTAGGLVAELDANILMSSKNDILSMPDKAGRRWVELHYIDTNEKMEPEFEKMLIDLAIKHDPKNKEYLKTVPEIGVGVWYKLQTDFQDDGKKMSLIIADYIDGVATILKKYKNDIQGKVHGYIVRRGTIAVKHPSGRMVGGDSKLSEWDAWDEQVVNEIKIEKVHTFNTATRPFEWIDDSVIPRLGRIPHKHWKSAEELSTYISQVADAEVRTFGGWARKK
Ga0209402_101226573F004439N/AFHTTDSDGVKSISKLEGKKGQISAFFEMQSRYMEVGVATSGGVHAVLEMDADVLLSASGDVMSHLDQSGRRWTSISDLKETSRWTKFAAVEKSLEKMFDPLVKKYLKRGEFQENATVWELWRMAKRKVDGKTMSLIIKDYMDGMEKVIKKNIDTFESAMLSYAKKRSTDLSWDEQVVNNIKVKTAHFFKLPIPIAQTDDQIEMSEKQQELIEFTESKGWSTKMWDAAIELEAYTRAVAKKELGK
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