NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209274_10000005

Scaffold Ga0209274_10000005


Overview

Basic Information
Taxon OID3300027853 Open in IMG/M
Scaffold IDGa0209274_10000005 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)284872
Total Scaffold Genes229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)184 (80.35%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000279Metagenome / Metatranscriptome1383Y
F000410Metagenome / Metatranscriptome1170Y
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y
F006799Metagenome / Metatranscriptome364Y
F011102Metagenome / Metatranscriptome295Y
F014407Metagenome / Metatranscriptome263Y
F028559Metagenome / Metatranscriptome191Y
F032558Metagenome / Metatranscriptome179Y
F042478Metagenome / Metatranscriptome158Y
F043506Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209274_10000005110F002101AGGAGMTTPVIALPLSTPEAAPAKKKRVLLLDTSQTKRELRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINAAGETDSRDKFCIELRGATPPQRIAFFVGGPEYLAAAPHSDDAPAGPDADALHREMVAALIAQASGSSSQRWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSLPEAPKPQSFFAPETAATETEIKREELL
Ga0209274_10000005111F004095AGGAGMSGVNGDKARFNRRRRAKISRRQSNEKMLKALAEKNLVAPAKPANLKEKVA
Ga0209274_10000005112F003337GGAMSVSALHRSLCWVMVVLCPFSLAAADTGSAVLHSQGGVWVNGFEIAASTAVFPGDVVETKPGFVANLDAEGSSVLIQPESIVKFEGTFLTLEHGSVSVGTSASMSVHVNCIKVEPVSNERTQYDVADVSGTVQVAARKNDVNITQGSVLQKPPQSGPSQAATVHEGQHATRDETTVCGAAQRPEGAGHALSAKWLEIGGGAGAGVLVLCLLFCSGSKPVSPAQP
Ga0209274_1000000513F043506GAGGMKDADRKGAAVKTSWTILPFPCASSPTDRRALRKDLLIALRASGSPVIVDFSDCSTLNYEDIDLLLECVAQAAGRDTKVLFVAGSRVNRVLLEVTRISSLVPVFNSVEEALAYPQIAAEDAFEDRRAS
Ga0209274_10000005174F032558GGAMSVEKINRSGSPQTEKKRAASAAGVQCLRCRSEIDSYAFTKFVFLPYGTAGGNIVLQCPKCGHIEFLAENSPLLRRLNAKPVAVGDGD
Ga0209274_1000000519F028559GGAMVGCAQAQVAAPAASYPTSDDTAAQPTAAAADGMSPVSELAGKVGLVRGVLKRLDPIHDQLLIHAFGGGDIRIAFDARTQLLPENTGMHLMSLPAGSVVSVDTVIDNGKLFARAVRTSPSNAVELNGQVVRYDAAKSQLTLRYPMSPKSVALRITSGTVIVNRGQPGSPQDLSAGMLVRVQFSPAQSMANNSVANNNVANNVEILAERGNSFTFEGRIVAVDLRARVLALSNDSDQAVRELAIGSLDTTSLRLLREGADVSIQAEFDGDRYNVRTVTLVSRNP
Ga0209274_10000005210F000279GAGMTHKPEDGAIEEIILPENLLPLGSVLGEGVTPLDVSMTLAKVFNVQYAEVALLRLEGGLLKFIFPEHLRTTGAIPISSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPVGDEAEVPAPPAPIQKLMSVPILDQHATVLGVIQISRKGTDPRFTQDFSREDLHDLEIAAGVLAGSPVMLEN
Ga0209274_100000054F006799AGGAGGMQLALQNAETINRLVEQGESLLKSFHDEHQKDPAAMETEFARGEVIGWRSTLHTLYRDCAEDIVNRVVTRTRLTIPDGEVPSGGIHAY
Ga0209274_100000056F000410GGAMSRKLVWIEQPRFQGFGCSECAWIFNSPSSPAGKSFDELMRNFELQRDKEFALHVCSDHPGTKRTRE
Ga0209274_100000058F042478GAGMQYFAMDEQNRATQFMNGPENPIYTEVFPNEDFAATGYWFWLKSSTANGFDVKAFDQNYVYMRSTELVWTDNTTFKRFVTDLPIAARCVASDAPGPEIQVADTSFQYFSSCSPYKSSDLGTAVNDLDAPVLMDTGGNIGQVSTRVLHYRYNCDSAFQNCVNEEQFFLAAGYGQWQWKHYQNGILVNSTLINNIEPGTASGTLPCTQSYQ
Ga0209274_1000000584F014407GGAGGMRVSLGCMFGCTLLVLSALGVAFGQDTNFASGPQYLINPDPTNHASPLFARAISTPSLSLAGPPLEVGASDATGVLTPGAGDQNVVPPSPDALPKVDFSPIYYGSLPVSVVEISFPANSETSQNELPASILDTGVWQITTVQALRERGFGVTLPEAAANSRAHARHGTRVFTNADIDRLRSGS
Ga0209274_1000000585F011102N/AMLNPAVISQGNSRPEPRKLFLRKQFVRRGGACLLEWRKVVCGVMIVILPTSVLAQDSSRAMLHSDGGVWLNGNPAPNSSAIFTNDLVQTQKGTTAKIDADGSTATVQSETIVQFDGDELALDHGGLELNTSRAMRVRVNCITVTPLSQEWTRYDVIDVDGRVTVAALEHDVRIHYRDGVARRSKEAGSSSDVTVHQGEQVTRDERCGAAVRDTRVVDADGAILNSVWAKAAGLTVIGVLTCWALCRGNEPVSPSAP
Ga0209274_1000000590F000269N/AMKIPRAFQRTNVLALLLLLVPLASASEQPTPKPTDVPATVIAHLPLPQATGSQMLLQKVNGKQYLYIQQAAKQGFMVVDVSKADNPSLLKRTAESNQATAGSLQIVSPDVAIAEAPEKTPATLTSNSHPTETVRVLDLSDPRNPKTLETFNKVTGILPDGNHGLIYLTNNDGLWVLRYNRPPALEPARKKPPCDSESAIMAMPPDCE
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