NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209274_10000183

Scaffold Ga0209274_10000183


Overview

Basic Information
Taxon OID3300027853 Open in IMG/M
Scaffold IDGa0209274_10000183 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50711
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (54.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001117Metagenome / Metatranscriptome773Y
F014041Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0209274_1000018310F014041GGAGMKDHDANRHPGPFRVMNVDSEFAGLLVAAGFLVMGFVSMPLATWFVLGAITLGVVVALLLRFTPKKFSRVVLGTVIILAVGVLWWLGHKPRRPRTVSSNALYVLPNNVPFTLHKTGYWLDCWFDQHAKVDRCKLTDENGNGTFEDVFLPCVGQTPLPQSELVFKNTRWTGDIWTRLPDERINAPIVQLKNGQFLLPQGLYAKAKSEVYCSPL
Ga0209274_1000018333F001117AGGMPENLVRIPSSFYRCAGPNCGVLKGVSDRWWIMWSSFDDYEAPVMHLAPWDEDLAVKEGALHVCGEGCAQKLQSQFMGNVIENRTRRSSG
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