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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027854 Open in IMG/M |
| Scaffold ID | Ga0209517_10000009 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 348492 |
| Total Scaffold Genes | 289 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 247 (85.47%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001273 | Metagenome / Metatranscriptome | 733 | Y |
| F005355 | Metagenome / Metatranscriptome | 403 | Y |
| F017345 | Metagenome / Metatranscriptome | 241 | Y |
| F021344 | Metagenome / Metatranscriptome | 219 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209517_10000009112 | F001273 | AGGAGG | MRIDRYTKSILTLIALLLAVIVLKPFFQPQPAMADGKYVGVQFSYSGGNHAFFDTRSGDVWEYGDNGQFRQHYKVHEFGKDHDRDHGR |
| Ga0209517_10000009128 | F021344 | GAG | MRRKRKQILDKGVEARRRARNSGLSPAVTRVVADKRKKPPKHRKDLLPEEV |
| Ga0209517_10000009285 | F017345 | AGGGGG | MLRPRLFSIRTVTGSAVLCLVLIVSSRPAIAQTNEGDYILILASGFLCDPDHAEACPAVAKDANGSSFEMSGAGTFSLHDKSVTAAGTFTRKSPSGTLLDTGVWLAASLVSFDSYGAAPNALHGQGMGFGPRARGPGRMQAILGPMSTGGLAVFRIRLLSMSGASKTAVLQVNCALGEVPRERSVEGIRLKLERSDTEYTQEAGGRLMILAVRAGIVTPGKTPNHETSPEIPESPQN |
| Ga0209517_1000000941 | F005355 | AGGAGG | MSNIRHDFSWSHMGRVCMIFSAAVVVVSAPTTMVANTKPTEVPAKVIAHLPLQEAPGSEMLLQTKGDKHFLYVQKASKQGFAVIDVTKPELPTLVNRTAPPNDATAGKLEMAGPDVGLAEVPDKNSKGVIRSTDNPTETVKILDLSDPAHPKVLQTFTGVTSILQDANRGLIYLANNEGLWILNHSRPGLTPTKKKPPCGSEDALASMPPDCQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |