NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10000529

Scaffold Ga0209517_10000529


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10000529 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64868
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (84.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009041Metagenome / Metatranscriptome324Y
F017747Metagenome / Metatranscriptome239Y
F029823Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000052939F017747GAGGLKWQHFVCLPMVAILPVSLLADDAAAAMLRSNGVGVLVNKNPAPASTALFLDDLIETQENSVARIEAGGSTADINPETMVQFNGDELVLEHGSLSVNTFHGLKVLVGCLIVRPVNNAEWTHYEVADLDGKVTVSALKNDVNIDSRSSNPQQAKQGGGSSGVTVREGEQTSRGEKCGALDNKASGSVAGKGAIMNSPWAKGVGVVTIGGLMCWALCQGGNPLSPSYP
Ga0209517_1000052944F009041GGAGGMTLPDSSSFKVRLVGKRVVVKVTLFSRAFPGTVAATDETGFCFQSDDMVTALREITGSAIASMDAPNVYLPFSSLEWLVFSEPKASAASA
Ga0209517_1000052948F029823AGGGGGMGFRFEFDSANRILLLRVEGQLSDKLLAECYEAVRKYSVATDASMGIFDLSSVTQFAVSGEFVRQLAGGEPAMPEATRRLRIIAVESRLGFGLARMFQLAGQSARPMLQVVHSMDEALAALAELGVQSPHFEPLA
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