Scaffold Ga0209517_10000636

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209517_10000636

Scaffold Ga0209517_10000636

Overview

Basic Information
Taxon OID	3300027854 Open in IMG/M
Scaffold ID	Ga0209517_10000636 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	58546
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (80.39%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015366	Metagenome / Metatranscriptome	255	Y
F036800	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209517_1000063621	F036800	GGAGG	MSAIADRALSVARPEAPTSTRAWVPLVGGLWVLANVALGALGIYIDWPIRCGFLAGLVNGSLLAVIAVATASERFQAGATGLLGGLSLSALRSDGSMVWKAMQGLHGFVDNAFRAMGIELNEKLHHAIEQETLYMVWTIVFVVMASLVAEWVRSSRAQTARER
Ga0209517_1000063635	F015366	GGA	MTSEKKWRAANAVGFLSGVLACLDALRDARIYWPPDVVWEGLRSPQRLELGGGIALIVVTLLTSGLRRRAEWGR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.