NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10000972

Scaffold Ga0209517_10000972


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10000972 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46197
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (56.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000482Metagenome / Metatranscriptome1089Y
F026320Metagenome / Metatranscriptome198Y
F044300Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000097217F000482N/AMQFSRTHLAIAIGSAGLLVLVFLGYLNWLSNQGPVLSRSEERDPLTQMPISITMNPFRDRTIERTANRFISEMRDGNCRKLLAQWEKDYRRKRADFLCSSEAQHPLISWNLVQWEDAPPLVILYYKGKRYSSPSQDATYKDLFSVTEEKKDSGWTVTKYDAFY
Ga0209517_100009722F026320AGGTGGMKKRDDLNDVIREETSRGKKRPVDTDAINAQEERRDAVLRIFRRGTREDLRALLKTWGYSNDEIEAALREYDVALGQQSF
Ga0209517_1000097230F044300AGGAGGMSCRRIFLVVALLLGTVASSWSKDFPLRIKVLSGESNQFQGPPLDPPNCNWRDLDAYCYNSSPITYVESTMVVQKPDGKSLKIACTVYNRWSRCTSLPVNQSFQARMGKRGLEIRYFDQRGKMRTQLYEVLRKNGDGVSRATTG
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