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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027854 Open in IMG/M |
| Scaffold ID | Ga0209517_10001962 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30064 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006676 | Metagenome / Metatranscriptome | 367 | Y |
| F010268 | Metagenome / Metatranscriptome | 306 | Y |
| F020407 | Metagenome / Metatranscriptome | 224 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209517_1000196224 | F010268 | GGAGG | MATMIAAPADERTGQLTSRSTGRGTRRVRPAAEEENVLGARFFLSKPGANGSSPELGRELPNEGEAKVEALKLGVTYYSVQEWRPVPDFGGKNPELKREAITRKGTA |
| Ga0209517_1000196225 | F020407 | AGGAGG | MVKQRFLTHFKPWLFAVIKVVGLIVGYQLFDKARTYLQYAPLNSVDVLLGAVVALLMAGLLCGLWSWGEWCWFKLQRLRGFCAELKRAFRNHWGPKAMRTSQPVTRNMA |
| Ga0209517_100019625 | F006676 | GAG | MEDGLDPKSKKAIQPFRWLPQIDQVLVVGMKYGPKGTHEAVKKLRQLAPELSPAQIWQRTRHLREKDRGKRSGPVEWSEHAIETLREGYRSGGRKKAEAIQTVRALYPGLSGHVVSRFARSQGWLEGERGTKKNDDRRPWTREEEEELFVRAGYDPVKEIARKLRRSEQSVRFRLKGRSISARVTDGWSLRRIQQTLHVSYRRLQHLIGNGFLRVRDPRVSAISLAEFCEKHKTTLQPGVEEKLVVDLWKEEDGHSWGRVAKLLGVTSAEVGKWVASGELKVVAPSVTDRAFEAFCRQHSAELNLQLMDPDVARWLIDEYGLKVVAPQLTSVPSSQKQALVVRPCPKCKRNIRGNVYFGHVRSCRGEMSQRDGGRSGANQQAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |