NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10004529

Scaffold Ga0209517_10004529


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10004529 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18213
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F036068Metagenome / Metatranscriptome170Y
F050089Metagenome145Y
F073812Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100045292F036068AGGAGMKRVPLFVACSLLVFGSAAMAQNKVDTKEHCPKESVSHKLDVGDVPGHSYWIGQGTCNATASDSSFAEKTSDWTEFREIWKTSINFHGRANMTMDNGDKVYLTYEGSASTDTTKPFTFKWKILSGTGKYTGIKGSGTTSMKFNADGSADDTCTGTYSLGK
Ga0209517_100045295F050089AGGMARQVFVLDAPPGREVCDFCSSSPTSRLYACRNFIIPRTKHAVFQHESIGAWAACDRCALLINAGDWSQLTGRAFRRFRKKYGVPRYEEFEVREQFREIHQLFKEHMIKEA
Ga0209517_100045296F073812GGAGMADPRRELESALSPLAWILNFFWDTIRLMFWFFMSPILIITWCFHHPVEARLYAVSAIPLLWNGNGGTRGLLVFFVVLIASLFGKTMHRICWGIIKLALLAGLVWYVYMIFKLA
Ga0209517_100045297F006757GAGVLPPIKTKLRVALLNIAAYKEIPTPQLIAAARALPGGTKVHCPDRLTAIVLLLGTRPVEL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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