NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10006464

Scaffold Ga0209517_10006464


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10006464 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14479
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017215Metagenome / Metatranscriptome242Y
F056021Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_100064645F056021GAGMQGRRRVLAPVLETIREDAAERWRGETVMKTHAHEATHSDDHAKSFLGYSSASFLQSLTTALVLGTIAALMGTAASAGLYYHHVAWYISAAAGPLVATLVVICLATIALEQARKRSIRRTLELAFLNHHVHNAVTQMIMASNLADPSKQELFMRQAVSRISEALFRVANSADLTRLSLKVDLGGAELIRSREGREKQWVARGA
Ga0209517_100064647F017215GGAMSEKRTKADKAQREADQLDKKSSHRPPQNQGKKPREDFNQAAVRIVEEAAEKH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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