NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10009334

Scaffold Ga0209517_10009334


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10009334 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11216
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002141Metagenome / Metatranscriptome590Y
F012737Metagenome / Metatranscriptome278Y
F072032Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000933412F012737GGAGMAILVALTRKRGNANWGKSIPFAPALPTEFELQVTQLQLRAGMYTSSAELRAWCEQNRNRCYVPEWLLEEWDITVDPISVA
Ga0209517_1000933413F002141GGAVIFSGSMAVSVEMQHTGDSGLQAEVRAIIEHVLADRPGVWRVSILGSQANDRWEMKIVGPNAFERSYTLEGSAGEHRPEVIRVILSKMLPGRKA
Ga0209517_100093342F072032N/AMDSEKELFDAFDRVVHEDFPNPQRIACLGRDVLLELAQRPADAQFAPLLAHIRQCAPCFDELKELRQKRRIQSP
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