NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10015464

Scaffold Ga0209517_10015464


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10015464 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7672
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001110Metagenome / Metatranscriptome775Y
F011897Metagenome / Metatranscriptome286Y
F035513Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1001546413F011897AGGAGGMRRERALKVVLVLVGLLFTAMVYPLVLFVKQEPALAMMLSI
Ga0209517_100154645F001110AGGAMAWDFCNLRTARWAGYSVPSRPQSAKLFQMINSLTLGFLWIALHWRTSAVIACAVGIVVTCRSYLETDEARVKRAQRKQKKELRTLADKISTYGRNVHQRYPTGDVVVSEHDLAEQLGKRPDTVATALNLLLGERKVQKAPLSGYWKLNV
Ga0209517_100154648F035513AGGMPTSKATLKDRLARYRQIKLSVIGRKTGQTISIPV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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